LAB 16: SEROLOGY: DIRECT AND INDIRECT SEROLOGIC TESTING

DISCUSSION

A. INTRODUCTION TO SEROLOGIC TESTING

The adaptive immune responses refer to the ability of the body (self) to recognize specific foreign antigens (non-self) that threaten its biological integrity. There are two major branches of the adaptive immune responses:

1. Humoral immunity: humoral immunity involves the production of antibody molecules in response to an antigen and is mediated by B-lymphocytes.

2. Cell-mediated immunity: Cell-mediated immunity involves the production of cytotoxic T-lymphocytes, activated macrophages, activated NK cells, and cytokines in response to an antigen and is mediated by T-lymphocytes.

 

To understand the immune responses we must first understand what is meant by the term antigen. Technically, an antigen is defined as a substance that reacts with antibody molecules and antigen receptors on lymphocytes. An immunogen is an antigen that is recognized by the body as nonself and stimulates an adaptive immune response. For simplicity, both antigens and immunogens are usually referred to as antigens.

Chemically, antigens are large molecular weight proteins (including conjugated proteins such as glycoproteins, lipoproteins, and nucleoproteins) and polysaccharides (including lipopolysaccharides). These protein and polysaccharide antigens are found on the surfaces of viruses and cells, including microbial cells (bacteria, fungi, protozoans) and human cells.

As mentioned above, the B-lymphocytes and T-lymphocytes are the cells that carry out adaptive immune responses. The body recognizes an antigen as foreign when that antigen binds to the surfaces of B-lymphocytes and T-lymphocytes by way of antigen-specific receptors having a shape that corresponds to that of the antigen, similar to interlocking pieces of a puzzle. The antigen receptors on the surfaces of B-lymphocytes are antibody molecules called B-cell receptors or sIg; the receptors on the surfaces of T-lymphocytes are called T-cell receptors (TCRs).

The actual portions or fragments of an antigen that react with receptors on B-lymphocytes and T-lymphocytes, as well as with free antibody molecules, are called epitopes. The size of an epitope is generally thought to be equivalent to 5-15 amino acids or 3-4 sugar residues. Some antigens, such as polysaccharides, usually have many epitopes, but all of the same specificity. This is because polysaccharides may be composed of hundreds of sugars with branching sugar side chains, but usually contain only one or two different sugars. As a result, most "shapes" along the polysaccharide are the same (see Fig. 1). Other antigens such as proteins usually have many epitopes of different specificities. This is because proteins are usually hundreds of amino acids long and are composed of 20 different amino acids. Certain amino acids are able to interact with other amino acids in the protein chain and this causes the protein to fold over upon itself and assume a complex three-dimensional shape. As a result, there are many different "shapes" on the protein (see Fig. 2). That is why proteins are more immunogenic than polysaccharides; they are chemically more complex.

A microbe, such as a single bacterium, has many different proteins (and polysaccharides) on its surface that collectively form its various structures, and each different protein may have many different epitopes. Therefore, immune responses are directed against many different parts or epitopes of the same microbe.

 

Fig. 1: Epitopes of an Antigen (Polysaccharide)

Fig. 2: Epitopes of an Antigen (Protein)

Illustration of a polysaccharide antigen showing epitopes.
Polysaccharides have many epitopes but of similar specificities.
Illustration of a protein antigen showing epitopes.
Proteins have many epitopes of different specificities.

Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
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Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
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Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
This work is licensed under a Creative Commons Attribution 3.0 Unported License
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In terms of infectious diseases, the following may act as antigens:

1.Microbial structures (cell walls, capsules, flagella, pili, viral capsids, envelope-associated glycoproteins, etc.); and

2. Microbial toxins

Certain non-infectious materials may also act as antigens if they are recognized as "non-self" by the body. These include:

1. Allergens (dust, pollen, hair, foods, dander, bee venom, drugs, and other agents causing allergic reactions);

2. Foreign tissues and cells (from transplants and transfusions); and

3. The body's own cells that the body fails to recognize as "normal self" (cancer cells, infected cells, cells involved in autoimmune diseases).

Antibodies or immunoglobulins are specific protein configurations produced by B-lymphocytes and plasma cells in response to a specific antigen and capable of reacting with that antigen. Antibodies are produced in the lymphoid tissue and once produced, are found mainly in the plasma portion of the blood (the liquid fraction of the blood before clotting). Serum is the liquid fraction of the blood after clotting.

There are 5 classes of human antibodies: IgG, IgM, IgA, IgD, and IgE. The simplest antibodies, such as IgG, IgD, and IgE, are "Y"-shaped macromolecules called monomers composed of four glycoprotein chains. There are two identical heavy chains having a high molecular weight that varies with the class of antibody. In addition, there are two identical light chains of one of two varieties: kappa or gamma. The light chains have a lower molecular weight. The four glycoprotein chains are connected to one another by disulfide (S-S) bonds and noncovalent bonds (see Fig. 3A). Additional S-S bonds fold the individual glycoprotein chains into a number of distinct globular domains. The area where the top of the "Y" joins the bottom is called the hinge. This area is flexible to enable the antibody to bind to pairs of epitopes various distances apart on an antigen.

The two tips of the "Y" monomer are referred to as the Fab portions of the antibody (see Fig. 3A). The first 110 amino acids or first domain of both the heavy and light chain of the Fab region of the antibody provide specificity for binding an epitope on an antigen. The Fab portions provide specificity for binding an epitope on an antigen. The bottom part of the "Y" is called the Fc portion and this part is responsible for the biological activity of the antibody (see Fig. 3A). Depending on the class of antibody, biological activities of the Fc portion of antibodies include the ability to activate the complement pathway (IgG & IgM), bind to phagocytes (IgG, IgA), or bind to mast cells and basophils (IgE).

Two classes of antibodies are more complex. IgM is a pentamer (see Fig. 3B), consisting of 5 "Y"-like molecules connected at their Fc portions, and secretory IgA is a dimer consisting of 2 "Y"-like molecules (see Fig. 3C).

 

Fig. 3A: IgG

Fig. 3B: IgM

Fig. 3C: Secretory IgA

Illustration of IgG, a monomer.
The Fab portion of the antibody has specificity for binding an epitope of an antigen. The Fc portion directs the biological activity of the antibody.
Illustration of IgM, a pentamer.
IgM is a pentamer and, therefore, has 10 Fab sites.
Illustration of secratory IgA, a dimer.
Secretory IgA is a dimer and has 4 Fab sites. A secretory component helps protect it from digestion in body secretions.

Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
This work is licensed under a Creative Commons Attribution 3.0 Unported License
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Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
This work is licensed under a Creative Commons Attribution 3.0 Unported License
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Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
This work is licensed under a Creative Commons Attribution 3.0 Unported License
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For more information on antigens, antibodies, and antibody production, see the following CourseArc lessons:

Serology refers to using antigen-antibody reactions in the laboratory for diagnostic purposes. Its name comes from the fact that serum, the liquid portion of the blood where antibodies are found is used in testing. Serologic testing may be used in the clinical laboratory in two distinct ways:

a. To identify unknown antigens (such as microorganisms). This is called direct serologic testing. Direct serologic testing uses a preparation known antibodies, called antiserum, to identify an unknown antigen such as a microorganism.

b. To detect antibodies being made against a specific antigen in the patient's serum. This is called indirect serologic testing. Indirect serologic testing is the procedure by which antibodies in a person's serum being made by that individual against an antigen associated with a particular disease are detected using a known antigen.

 

B. DIRECT SEROLOGIC TESTING: USING ANTIGEN-ANTIBODY REACTIONS IN THE LABORATORY TO IDENTIFY UNKNOWN ANTIGENS SUCH AS MICROORGANISMS.

This type of serologic testing employs known antiserum (serum containing specific known antibodies). The preparation of known antibodies is prepared in one of two ways: in animals or by hybridoma cells.

1. Preparation of known antisera in animals.

Preparation of known antiserum in animals involves inoculating animals with specific known antigens such as a specific strain of a bacterium. After the animal's immune responses have had time to produce antibodies against that antigen, the animal is bled and the blood is allowed to clot. The resulting liquid portion of the blood is the serum and it will contain antibodies specific for the injected antigen.

However, one of the problems of using antibodies prepared in animals (by injecting the animal with a specific antigen and collecting the serum after antibodies are produced) is that up to 90% of the antibodies in the animal's serum may be antibodies the animal has made "on its own" against environmental antigens, rather than those made against the injected antigen. The development of monoclonal antibody technique has largely solved that problem.

2. Preparation of known antibodies by monoclonal antibody technique.

One of the major breakthroughs in immunology occurred when monoclonal antibody technique was developed. Monoclonal antibodies are antibodies of a single specific type. In this technique, an animal is injected with the specific antigen (see Fig. 4, step 1) for the antibody desired. After appropriate time for antibody production, the animal's spleen is removed. The spleen is rich in plasma cells and each plasma cell produces only one specific type of antibody. However, plasma cells will not grow artificially in cell culture. Therefore, a plasma cell producing the desired antibody is fused with a myeloma cell ,a cancer cell from bone marrow which will grow rapidly in cell culture, to produce a hybridoma cell (see Fig. 4, step 2). The hybridoma cell has the characteristics of both parent cells. It will produce the specific antibodies like the plasma cell and will also grow readily in cell culture like the myeloma cell. The hybridoma cells are grown artificially in huge vats where they produce large quantities of the specific antibody (see Fig. 4, step 3).

 

Fig. 4: Production of Monoclonal Antibodies, Step-1

Fig. 4: Production of Monoclonal Antibodies, Step-2

Fig. 4: Production of Monoclonal Antibodies, Step-3

Illustretion of monoclonal antibody production, step 1. Injecting a mouse with a known antigen and removing B-lymphocytes from the spleen and finding one making the desired antibody.
Illustretion of monoclonal antibody production, step 2. Fusing antibody B-lymphocytes with cancerous B-lymphocytes to produce hybridoma cells.
Illustretion of monoclonal antibody production, step 3. Growing hybridoma cells in cell culture to produce the desired antibodies.

Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
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Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
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Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
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Monoclonal antibodies are now used routinely in medical research and diagnostic serology and are being used experimentally in treating certain cancers and a few other diseases.

3. The concept and general procedure for direct serologic testing.

The concept and general procedure for using antigen-antibody reactions to identify unknown antigens are as follows:

Examples of serologic tests used to identify unknown microorganisms include the serological typing of Shigella and Salmonella, the Lancefield typing of beta streptococci, and the serological identification of Neisseria gonorrhoeae and Neisseria meningitidis. Serological tests used to identify antigens which are not microorganisms include blood typing, tissue typing, and pregnancy testing.

 

4. Examples of direct serologic testing to identify unknown antigens

As stated above, this type of serologic testing uses known antiserum (antibodies) to identify unknown antigens. Four such tests will be looked at in lab today.

a. Serological Typing of Shigella

There are four different serological subgroups of Shigella, each corresponding to a different species:

  • subgroup A = Shigella dysenteriae
  • subgroup B = Shigella flexneri
  • subgroup C = Shigella boydii
  • subgroup D = Shigella sonnei

Known antiserum is available for each of the 4 subgroups of Shigella listed above and contains antibodies against the cell wall ("O" antigens) of Shigella. The suspected Shigella (the unknown antigen) is placed in each of 4 circles on a slide and a different known antiserum (A, B, C or D) is then added to each circle. A positive antigen-antibody reaction appears as a clumping or agglutination of the Shigella (see Fig. 5).

 

Fig. 5: Agglutination of Microorganisms

Illustration of IgM causing agglutination of bacteria.
The Fab portions of the antibodies link microorganism together causing agglutination on the slide.

Gary E. Kaiser, Ph.D.
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b. Serological Typing of Streptococci

The Clearview® Strep A Exact II Dipstick is an example of a lateral flow immunologic assay. It is is a qualitative serologic test for detecting Group A Streptococcal antigen (the unknown antigen) directly from throat swabs and is used as an aid in diagnosing streptococcal pharyngitis caused by Streptococcus pyogenes (Group A Beta Streptococci).

The test consists of a membrane strip that is precoated with rabbit anti-Strep A monoclonal antibody-red latex conjugate (known antibodies made in rabbits against strep A antigen with red latex particles attached) located in a pad at the beginning of the strip. It is also precoated with rabbit anti-Strep A monoclonal antibody (known antibodies made in rabbits against the strep A antigen but without attached red latex particles) that is immobilized at the test line where the test results are read (see Fig. 6A). The red latex particles attached to the rabbit anti-Strep A antibodies are what ultimately causes the “positive” red band.

 

Fig. 6A: Serologic Testing to Identify Group A Streptococcus Antigen: The Test Strip

Illustration of the test strip for detecting Group A Streptococcus antigen.

Gary E. Kaiser, Ph.D.
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The throat swab is placed in an extraction solution that lyses the Streptococcus pyogenes, if present, and exposes the strep A antigen in the bacterial cell wall. When the test strip is immersed in the extracted sample, the Group A Streptococcal antigen extracted from the Streptococcus pyogenes on the throat swab of a person with strep throat begins to move chromatographically up the membrane and binds to the known antibody-red latex conjugate in the pad located at the beginning of the strip, forming a Strep A antigen-antibody complex (see Fig. 6B). This Strep A antigen-antibody complex continues to moves up the membrane to the test line region where the immobilized rabbit anti-Strep A antibodies are located.

 

Fig. 6B: Serologic Testing to Identify Group A Streptococcus Antigen: Known Antibodies Against Strep A Antigen binding to Strep A Antigens

Illustration of cell wall fragments containing Strep A antigen binding to known anti-Strep A antibodies bound to red latex particles.
Cell wall fragments containing Strep A antigen binds to known anti-Strep A antibodies bound to red latex particles.

Gary E. Kaiser, Ph.D.
Professor of Microbiology
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If Group A Streptococcal antigen is present in the throat swab, a red-colored sandwich of known antibody/Strep A antigen/red latex conjugate forms in the test line region of the strip (see Fig. 6C). The control region of the strip has immobilized anti-rabbit antibodies, that is, antibodies made in a different animal against rabbit antibodies. The red color at the control line region appears when molecules of the rabbit anti-Strep A antibody-red latex conjugate not trapped at the test line reach the control area and are stopped by binding to the anti-rabbit antibodies. This indicates that the test is finished. As a result, a positive test for Group A Strep antigen appears as a red band in the test result area and a red band in the control area (see Fig. 6C).

 

Fig. 6C: Serologic Testing to Identify Group A Streptococcus Antigen: A Positive Test

Illustration of a positive test for Group A Strepyococcus showing twp red bands.
Note two red stripes.

Gary E. Kaiser, Ph.D.
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If there is no Group A Streptococcal antigen present in the throat swab no red band appears in the test result region of the strip  and a single red band appears in the control line region, indicating a negative test for Group A Strep antigen (see Fig. 6D).

 

Fig. 6D: Serologic Testing to Identify Group A Streptococcus Antigen: A Negative Test

Illustration of a negative test for Group A Streptoccus antigen showing only one red stripe in the test control area.
Note only one red stripe in the test control area.

Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
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Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
This work is licensed under a Creative Commons Attribution 3.0 Unported License
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c. Serological Testing to Diagnose Pregnancy

The Alere® hCG Dipstick is an example of a lateral flow immunologic assay. It is a qualitative serologic test for detecting early pregnancy. The hormone human chorionic gonadotropin (hCG), produced by the placenta, appears in the serum and urine of pregnant females. The hCG is composed of two subunits - alpha and beta. The Alere® hCG Dipstick is a one step pregnancy test that detects levels of hCG as low as 25 mlU/ml. Human chorionic gonadotropin (hCG), the unknown antigen for which one is testing, is identified in the urine by using known mouse monoclonal antibodies against the beta subunit of  hCG bound to colloidal gold, which is red in color. It also uses known goat polyclonal antibodies against the alpha subunit of hCG which is immobilized on the test result region of the dipstick.

Like the Strep A test mentioned above, this test uses a color immunochromatographic assay to detect the antigen-antibody reaction.The test consists of a membrane strip that is precoated with known mouse anti- beta hCG antibody-colloidal gold conjugate (known antibodies made in mice against the beta chain og hCG with red colloidal gold particles attached) located in a pad at the beginning of the strip. It is also precoated with known goat anti-alpha hCG antibody (known antibodies made in goats against the alpha chain of hCG without attached red colloidal gold) that is immobilized at the test line where the test results are read (see Fig. 7B1). The red colloidal gold particles attached to the mouse anti-alpha hCG antibody is what ultimately causes the “positive” red band in the test area.

 

Fig. 7B1: Serologic Testing to Identify hCG Antigen: The hCG Test Dipstick

Illustration of the hCG dipstick test strip for pregnancy. 

Gary E. Kaiser, Ph.D.
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When the test strip is immersed in the urine sample, the hCG begins to move chromatographically up the membrane and binds to the red-colored known anti-beta hCG antibody-gold conjugate in the pad located at the beginning of the strip, forming a hCG antigen-antibody complex (see Fig. 7B2). This hCG antigen-antibody complex continues to moves up the membrane to the test line region where the immobilized known goat anti-beta hCG antibodies are located.

 

Fig. 7B2: Serologic Testing to Identify hCG Antigen

Illustration of known monoclonal antibodies against the beta chain of human hCG (bound to colloidal gold) reacting with the beta chain of human hCG.
Known monoclonal antibodies against the beta chain of human hCG (bound to colloidal gold) reacting with the beta chain of human hCG.

Gary E. Kaiser, Ph.D.
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If hCG is present in the urine, a red-colored sandwich of anti-beta antibody/hCG antigen/red gold conjugate anti-alpha antibody forms in the test line region of the strip (see Fig. 7B3). The control region of the strip has immobilized anti-mouse antibodies, that is, antibodies made in a different animal against mouse antibodies. The red color at the control line region appears when molecules of the rabbit anti-hCG antibody-red latex conjugate not trapped at the test line reach the control area and are stopped by binding to the anti-mouse antibodies. The red color at the control line region indicates that the test is finished. As a result, a positive test for hCG antigen appears as a red band in the test result area and a red band in the control area (see Fig. 7B3).

 

Fig. 7B3: Serologic Testing to Identify hCG Antigen: A Positive Test

Illustration of a positive pregnancy test for hCG showing a red band in both the control and the test regions.
Note red band in both the control and the test regions.

Gary E. Kaiser, Ph.D.
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If there is no detectable hCG antigen present in the urine no red band appears in the test result region of the strip and a single red band appears in the control line region, indicating a negative test for hCG antigen (see Fig. 7B4).

 

Fig. 7B4: Serologic Testing to Identify hCG Antigen: A Negative Test

Note red band in the control region but not in the test region.

Gary E. Kaiser, Ph.D.
Professor of Microbiology
The Community College of Baltimore County, Catonsville Campus
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Gary E. Kaiser, Ph.D.
Professor of Microbiology
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d. COVID-19 Rapid Antigen Tests

Discussion

The various COVID-19 rapid antigen tests are also examples of lateral flow immunologic assays. They are qualitative serologic tests for detecting COVID-19 infection. They detect the nucleocapsid protein antigen (N protein) of SARS-Cov-2, the virus that causes COVID-19. Swabs from the nose or throat are placed in a buffer solution that maintains a pH of 7.4, the pH of the blood. The buffer solutions also contain agents that lyse the viruses, releasing the various viral antigens, including the N protein antigen. The N protein, the unknown antigen for which one is testing, is identified in the sample by using known monoclonal antibodies, made in animals such as rabbits, mice, or chickens, against the N protein and bound to colloidal gold, which is red in color.

Like the Strep A and pregnancy tests mentioned above, this test uses a color immunochromatographic assay to detect the antigen-antibody reaction. The test consists of a membrane strip that is precoated with known anti-N protein antibody-colloidal gold conjugate (known antibodies made in rabbits, mice, chickens, etc. against the N protein of SARS-Cov-2 with red colloidal gold particles attached) located in a pad at the beginning of the strip. In this example discussed here, the anti-N protein antibodies are made using monoclonal antibody technique in rabbits. It is also precoated with known anti-N protein antibody (known antibodies made in rabbits against N protein without attached red colloidal gold) that are immobilized at the test line where the test results are read. The red colloidal gold particles attached to the anti-N protein antibodies is what ultimately causes the positive red band in the test area.

When the patient's sample is added to the sample well, the N-protein antigen, if present, begins to move chromatographically up the membrane and binds to the red-colored known anti-N protein rabbit antibody-gold conjugate in the pad located at the beginning of the test assembly, forming a N protein antigen-antibody-gold conjugate complex. This N protein antigen-antibody complex continues to move up the membrane to the test line region where the immobilized known rabbit anti-N protein antibodies are located.

If N protein is present in the patient's sample, a red-colored sandwich of N protein antigen/anti-N protein rabbit antibody-gold conjugate forms in the test line region of the strip resulting in formation of a red band.

The control region of the strip is precoated with immobilized anti-rabbit antibody antibodies (antibodies made in a different animal against rabbit antibodies). The red color at the control line region appears when molecules of the anti-N protein antibody-red latex conjugate that were not trapped at the test line reach the control area and are stopped by binding to the anti-rabbit antibody antibodies. The red color indicates that the test is finished. As a result, a positive test for COVID-19 antigen appears as a red band in the test result area and a red band in the control area.

If there is no detectable SARS-Cov-2 N protein antigen present in the patient's sample, no red band appears in the test result region of the strip and a single red band appears in the control line region only, indicating a negative antigen test for COVID-19.

 

e. Identification of Microorganisms Using the Direct Fluorescent Antibody Technique

Certain fluorescent dyes can be chemically attached to the known antibody molecules in antiserum. The known fluorescent antibody is then mixed with the unknown antigen,such as a microorganism, fixed to a slide. After washing, to remove any fluorescent antibody not bound to the antigen, the slide is viewed with a fluorescent microscope.

If the fluorescent antibody reacted with the unknown antigen, the antigen will glow or fluoresce under the fluorescent microscope. If the antibody did not react with the antigen, the antibodies will be washed off the slide and the antigen will not fluoresce.

Gary E. Kaiser, Ph.D.
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For example, in the direct fluorescent antibody test for Neisseria gonorrhoeae, the unknown antigen, suspected Neisseria gonorrhoeae,is fixed to a microscope slide. Known fluorescent antibodies made against N. gonorrhoeae are then added (see Fig. 8, step 1) and the slide is then washed to remove any fluorescent antibody not bound to the antigen. The slide is then viewed under a fluorescent microscope.

 

Fig. 8: Direct Fluorescent Antibody Test for Neisseria gonorrhoeae, Step-1

Illustration of known fluorescent antibodies made against <i>N. gonorrhoeae</i> being added to suspected <i>N. gonorrhoeae</i>.
The unknown antigen, suspected Neisseria gonorrhoeae, is fixed to a microscope slide. Known fluorescent antibodies made against N. gonorrhoeae are added. The slide is then washed and viewed under a fluorescent microscope.

Gary E. Kaiser, Ph.D.
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If the unknown antigen is Neisseria gonorrhoeae, the known antibodies against N. gonorrhoeae with attached fluorescent dye will bind to the bacterium and will not wash off. The bacteria will fluoresce when viewed under a fluorescent microscope (see Fig. 8, step 2 and Fig. 9). If the unknown antigen is not N. gonorrhoeae, the known fluorescent antibodies against will wash off the slide and the bacteria will not fluoresce when viewed under a fluorescent microscope.

 

Fig. 8: Direct Fluorescent Antibody Test for Neisseria gonorrhoeae, Step-2

Fig. 9: A Positive Direct Fluorescent Antibody Test for Neisseria gonorrhoeae

Illustration showing the known antibodies against <em>N. gonorrhoeae</em> with attached fluorescent dye binding to the bacterium causing the bacteria to fluoresce when viewed under a fluorescent microscope.
If the unknown antigen is Neisseria gonorrhoeae, the known antibodies against N. gonorrhoeae with attached fluorescent dye will bind to the bacterium and will not wash off. The bacteria will fluoresce when viewed under a fluorescent microscope.
Photomicrograph of a positive direct fluorescent antibody test for <em>N. gonorrhoeae</em> showing fluorescinh diplococci.
Note green-fluorescent diplococci.

Gary E. Kaiser, Ph.D.
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By Content Providers(s): CDC/Public domain. Courtesy of the Centers for Disease Control and Prevention.

 

Many bacteria, viruses, and fungi can be identified using this technique.

 

e. Identification of SAR-CoV-2 RNA Using RT-PCR

The RT-PCR (reverse transcriptase polymerase chain reaction) method is used to diagnose COVID-19 infection by detecting SARS-CoV-2 RNA in a person's nose or throat. The viruses on the swab are lysed and their RNA genomes are purified. Reverse transcriptase is then used to make DNA copies of the RNA viral genome. Polymerase chain reactions are then used to rapidly amplify the number of DNA copies. During this hybridation, probes labeled with a fluorophore bind to their complementary DNA strands.(A fluorophore is a fluorescent chemical compound that can re-emit light upon light excitation.) A TaqMan probe then cleaves the fluorophore bound to the labeled probe and the degree of floresence can then be used to indicate the presence of certain SARS-CoV-2 RNA in the original patient sample.

YouTube Animation illustrating the use of RT-PCR to diagnose COVID-19 by detecting SARS-CoV-2 RNA from a persons nose or throat.

 

 

 

Medscape articles on infections associated with organisms mentioned in this lab exercise. Registration to access this website is free.

 

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C. INDIRECT SEROLOGIC TESTING: USING ANTIGEN-ANTIBODY REACTIONS IN THE LABORATORY TO INDIRECTLY DIAGNOSE DISEASE BY DETECTING ANTIBODIES IN A PERSON'S SERUM PRODUCED AGAINST A DISEASE ANTIGEN

Indirect serologic testing is the procedure whereby antibodies in a person's serum being made by that individual against an antigen associated with a particular disease are detected using a known antigen.

1. The concept and general procedure for indirect serologic testing.

The concept and general procedure for this type of serological testing are as follows:

  • Concept:

    This type of testing is based on the fact that antibodies are only produced in response to a specific antigen. In other words, a person will not be producing antibodies against a disease antigen unless that antigen is in the body stimulating antibody production.

  • General Procedure:

    A sample of the patient's serum (the liquid portion of the blood after clotting and containing antibodies against the disease antigen if the person has or has had the disease) is mixed with the known antigen for that suspected disease. One then looks for an antigen-antibody reaction.

    Examples of serologic tests to diagnose disease by the detection of antibodies in the patient's serum include the various serological tests for syphilis or STS (such as the RPR, the VDRL, and the FTA-ABS tests), the tests for infectious mononucleosis, the tests for the Human Immunodeficiency Virus (HIV), the tests for systemic lupus erythematosus, and tests for variety of other viral infections.

2. Qualitative and quantitative serologic tests.

Indirect serologic tests may be qualitative or quantitative. A qualitative test only detects the presence or absence of specific antibodies in the patient's serum and is often used for screening purposes. A quantitative test gives the titer or amount of that antibody in the serum. Titer indicates how far you can dilute the patient's serum and still have it contain enough antibodies to give a detectable antigen-antibody reaction. In other words, the more antibodies being produced by the body, the more you can dilute the person's serum and still see a reaction. Quantitative serological tests are often used to follow the progress of a disease by looking for a rise and subsequent drop in antibody titer.